OBO Foundry dashboard analysis¶

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/tmp/ipykernel_4455/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    26
Turtle            25
unknown            4
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 51 6173.696429 20697.675884 0.0 172.50 1277.5 2955.50 124680.0
Declaration 51 1202.196429 3336.130592 0.0 86.50 385.0 904.75 22818.0
SubClassOf 49 1551.571429 4508.562689 0.0 14.75 343.0 1128.50 24611.0
ObjectPropertyDomain 46 30.714286 33.800330 0.0 8.00 22.0 42.00 133.0
ObjectPropertyRange 46 32.750000 34.277080 0.0 11.25 24.5 44.00 144.0
DataPropertyRange 40 11.750000 18.996890 0.0 0.00 3.0 14.50 97.0
SubObjectPropertyOf 40 51.928571 68.641587 0.0 0.00 26.0 66.00 284.0
InverseObjectProperties 38 12.000000 26.227674 0.0 0.00 2.0 11.00 126.0
DataPropertyDomain 37 10.732143 32.507057 0.0 0.00 2.0 5.00 235.0
DisjointClasses 37 239.428571 1638.834540 0.0 0.00 3.5 20.25 12277.0
ClassAssertion 35 121.767857 377.331250 0.0 0.00 2.0 21.00 1952.0
EquivalentClasses 33 159.303571 819.768546 0.0 0.00 3.0 66.25 6147.0
TransitiveObjectProperty 31 4.196429 6.642616 0.0 0.00 1.0 6.00 32.0
SubAnnotationPropertyOf 27 13.232143 34.063572 0.0 0.00 0.0 15.50 228.0
SubDataPropertyOf 26 6.214286 11.831721 0.0 0.00 0.0 9.25 63.0
FunctionalObjectProperty 23 2.517857 4.225426 0.0 0.00 0.0 4.00 17.0
FunctionalDataProperty 21 1.428571 3.014252 0.0 0.00 0.0 2.00 19.0
InverseFunctionalObjectProperty 21 1.767857 3.162226 0.0 0.00 0.0 1.50 12.0
SymmetricObjectProperty 19 3.303571 6.327199 0.0 0.00 0.0 6.25 35.0
IrrefexiveObjectProperty 18 3.196429 6.320010 0.0 0.00 0.0 1.00 22.0
AnnotationPropertyRangeOf 18 5.857143 18.827860 0.0 0.00 0.0 2.00 134.0
AsymmetricObjectProperty 16 2.535714 5.379977 0.0 0.00 0.0 1.00 20.0
ObjectPropertyAssertion 15 267.321429 1390.881566 0.0 0.00 0.0 2.00 10226.0
DisjointUnion 12 5.821429 17.499202 0.0 0.00 0.0 0.00 116.0
DataPropertyAssertion 12 110.964286 508.834675 0.0 0.00 0.0 0.00 3617.0
SubPropertyChainOf 10 3.232143 16.272667 0.0 0.00 0.0 0.00 120.0
ReflexiveObjectProperty 8 0.178571 0.508371 0.0 0.00 0.0 0.00 3.0
DifferentIndividuals 6 0.339286 1.195093 0.0 0.00 0.0 0.00 6.0
AnnotationPropertyDomain 6 0.214286 0.867898 0.0 0.00 0.0 0.00 6.0
EquivalentObjectProperties 6 1.142857 5.035974 0.0 0.00 0.0 0.00 36.0
DisjointObjectProperties 5 0.357143 1.406848 0.0 0.00 0.0 0.00 8.0
SameIndividual 3 0.553571 2.593135 0.0 0.00 0.0 0.00 17.0
Rule 3 0.660714 3.517627 0.0 0.00 0.0 0.00 25.0
EquivalentDataProperties 3 0.339286 1.564106 0.0 0.00 0.0 0.00 10.0
NegativeObjectPropertyAssertion 2 0.035714 0.187256 0.0 0.00 0.0 0.00 1.0
DatatypeDefinition 2 0.357143 2.540069 0.0 0.00 0.0 0.00 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 52 5312.196429 14379.623790 0.0 188.75 1163.0 4512.00 78469.0
ObjectUnionOf 36 15.107143 22.688146 0.0 0.00 5.0 13.25 88.0
ObjectAllValuesFrom 33 28.375000 61.053349 0.0 0.00 5.0 38.50 400.0
ObjectSomeValuesFrom 31 435.285714 2221.416163 0.0 0.00 7.5 118.75 16614.0
ObjectIntersectionOf 29 141.785714 831.104407 0.0 0.00 1.0 19.25 6217.0
ObjectExactCardinality 28 9.785714 26.371965 0.0 0.00 0.5 5.00 115.0
DataExactCardinality 20 2.017857 3.600460 0.0 0.00 0.0 3.00 14.0
DataHasValue 19 30.714286 77.680163 0.0 0.00 0.0 8.00 494.0
DataAllValuesFrom 17 0.964286 1.828703 0.0 0.00 0.0 1.25 8.0
ObjectComplementOf 16 5.178571 24.099119 0.0 0.00 0.0 1.50 179.0
ObjectHasValue 15 9.535714 33.133869 0.0 0.00 0.0 1.00 189.0
ObjectMinCardinality 14 1.464286 4.335747 0.0 0.00 0.0 0.25 28.0
DataSomeValuesFrom 13 1.410714 3.372492 0.0 0.00 0.0 0.00 17.0
ObjectOneOf 11 13.339286 55.139584 0.0 0.00 0.0 0.00 272.0
ObjectMaxCardinality 8 16.767857 119.430618 0.0 0.00 0.0 0.00 894.0
DataMinCardinality 4 0.303571 1.877325 0.0 0.00 0.0 0.00 14.0
DataMaxCardinality 4 1.464286 8.418517 0.0 0.00 0.0 0.00 61.0
ObjectHasSelf 1 0.017857 0.133631 0.0 0.00 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
35 PATO 0.350 0.556 0.143
17 FOAF 0.345 0.333 0.357
30 OBO 0.339 0.571 0.107
37 PROVO 0.305 0.504 0.107
19 IAO 0.300 0.600 0.000
22 MDO 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
31 OEO 0.285 0.571 0.000
49 enanomapper 0.285 0.571 0.000
10 EMMO_BattINFO 0.275 0.549 0.000
38 QUDT 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
2 BWMD-MID 0.252 0.504 0.000
41 SEMMD 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
50 m4i 0.241 0.482 0.000
40 SAREF 0.241 0.482 0.000
27 NPO 0.234 0.467 0.000
32 OM 0.234 0.467 0.000
44 SP 0.234 0.467 0.000
21 MAMBO 0.234 0.467 0.000
43 SO 0.234 0.467 0.000
46 UO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
16 EMMO_microstructure 0.234 0.467 0.000
18 GPO 0.222 0.444 0.000
36 PMD 0.222 0.444 0.000
5 CIF 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
25 MatOnto 0.222 0.444 0.000
24 MSEO 0.222 0.444 0.000
52 mvc 0.222 0.444 0.000
26 MaterialsMine 0.222 0.444 0.000
29 OA 0.222 0.444 0.000
28 NanoMine 0.222 0.444 0.000
9 EMMO_BVC 0.222 0.444 0.000
20 LPBFO 0.219 0.438 0.000
23 MOL_TENSILE 0.208 0.416 0.000
47 WILD 0.200 0.400 0.000
34 P-Plan 0.200 0.400 0.000
54 periodictable 0.200 0.400 0.000
53 opmw 0.200 0.400 0.000
42 SKOS_MDO 0.200 0.400 0.000
33 OSMO 0.189 0.378 0.000
45 SSN 0.189 0.378 0.000
55 ssos 0.155 0.311 0.000
39 QUDV 0.000 0.000 0.000
48 bmo 0.000 0.000 0.000
51 matinfo 0.000 0.000 0.000
11 EMMO_Datamodel 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 56.0 0.226536 0.074151 0.0 0.22125 0.234 0.26675 0.350
score_dash 56.0 0.440161 0.138091 0.0 0.43250 0.467 0.50400 0.600
score_impact 56.0 0.012750 0.054221 0.0 0.00000 0.000 0.00000 0.357

OBO dependency graph